Scaffold Ga0186452_1007098

Overview

Basic Information

• Taxon OID: 3300017352
• Scaffold ID: Ga0186452_1007098
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from English Channel in Marine Media, 18 C, 36 psu salinity and 462 ?mol photons light - Haptolina brevifila UTEX LB 985 (MMETSP1094)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1531
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: English Channel
• Coordinates
  • Lat. (^o): 49.35
  • Long. (^o): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044865	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186452_10070982	F044865	GAG	MTNNGPPSAGGGARFSMLKRSSTRDDTADDEGHERGSGGGRNPTNRSLMPSTSDLKWVDQFPFHPAYRYHSYRSCCGAVSSVLFLMILFLRVVTSISEFVERPPIVTEAREQFPRDSLSQYLLPRVGVQFRENGWKPFSDPRYLSIIFEQGVITMSGNVTYIPLGTKECAFIDKDGRLIADGALCPLAEGDGAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCVMPSEIDRLVYQGVLYMFEQETDMRVDDSAPFLRIRQWRREFVTGVHISTDVFFTVRHVTQEAQYIFDAYMPGSQAGNSFTLLHSSQETYTDFEEEAAQYAAFYFRLAPELIRQRRSKNSLFGLFESWGAMAAFLYLVFGLTARQFNAYHFNRQVRGLDLRKLDKNQFTTFGRLIDKSFQMPREFQGMTA