Scaffold Ga0186228_112660

Overview

Basic Information

• Taxon OID: 3300017336
• Scaffold ID: Ga0186228_112660
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from South Pacific Ocean in marine media K with soil extract, 1 C, 36 psu salinity and 391 ?mol photons light - Phaeocystis antarctica Caron Lab Isolate (MMETSP1100)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1026
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: South Pacific Ocean
• Coordinates
  • Lat. (^o): -77.625
  • Long. (^o): -179.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F102330	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186228_1126601	F102330	N/A	SMLRALALLATLHGGTALRLSPALTQHCKTALVAGFCSAQLLVAPAFGVVGPTLSEAIVELDAAAYPIIKALPADSFPAFSAKIGDLFLGFKPDKLAKSINLGADLFNSVPQDDITAFNGVVKGAFDGLKPDSCELVPLPPPSLLAKFTGSEGFAAADATKLKAFDDKWGPTLRALPRTQDGAKICLPSPENLDKLAFAQAKLGKAFGGEEAKAFGTYFGGVSKASIVPGKVLPLIGDAQKQTMGASLKERQRFKAAGKDLETISKTCAALPKKAQCEL