Scaffold Ga0186227_115564

Overview

Basic Information

• Taxon OID: 3300017316
• Scaffold ID: Ga0186227_115564
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Southern California in marine media K with soil extract, 18 C, 36 psu salinity and 359 ?mol photons light - Rhodomonas abbreviata Caron Lab Isolate Isolate (MMETSP1101)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 797
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: USA: Southern California
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011850	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186227_1155641	F011850	N/A	GAQTFLSSAIENVPFIDEVTGEAQGFTAPKNHFASVISLWVLFALPVWSAAYKQAGCDTPDWFGISQVNEDAPGVGLLAKAAPEYNGPSFREGLEYVFSFVWKPPILIAWKPRTDIEIAAMDPARDTVVSSLYKGFGGALDKTAVYDEEDQLLILSDIVTFEETELGRRREKIAEEAGWYTGNPSFGRSLIEYSEQTRKGKRDVGTVTISTEELAKLRAEAAKN