Scaffold Ga0186119_1036987

Overview

Basic Information

• Taxon OID: 3300017311
• Scaffold ID: Ga0186119_1036987
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from unknown location in HESNW medium w/o silica, at 18 C, 30 psu salinity and 654 ?mol photons light - Protoceratium reticulatum CCCM 535 (MMETSP0228)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 635
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015562	Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186119_10369871	F015562	AGGA	MQLSMAAAALLLALCAPTASGYPVYTTGSAVDTCGGISCKPLECKPPFKYVAPKDAGTCCPLCLADSVKVPEDRSWAKGLTGGVGMNNNADPVMCRDVVCPKPLCAEYDQIFDGRCCTKCKSAAIVTPADLAKEYKDLP