NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186179_1012901

Scaffold Ga0186179_1012901


Overview

Basic Information
Taxon OID3300017309 Open in IMG/M
Scaffold IDGa0186179_1012901 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 15 C, 31 psu salinity and 375 ?mol photons light - Alexandrium catenella OF101 (MMETSP0790)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1200
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088217Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0186179_10129011F088217GGAGGMLATTSLCRCICGTGRRDNFDPSGRQGADFDAAREAEDASPYQQPKEDCGLLSYYVVVDQPLRGVPIREGELWYLSAEESIDPVMLSLYVNGFSFAQGSGEVSISLSPFSLVRNCKFQSTYTNCLNLSEFKIFKVSLFTQGICYYFGVRSEDERQAEEERSRWVLDFSRAMRLVTQSLFPPFSITCDPIDSVASTQRRLMAGYLIHHEDVSLASVLYCELHPHVDDQAKLTLYENELCKTPVMDIYITERSVCCEKVGINCSCFCVEDHQFGTRTLSERKLWLRAISNVKVKLQNRAPSPTTEEISHYRLAIKEHIDTIKATLVSKAPTDALLRRGPQKAFQATPFTMDASAPPAPQGADTQAKVPDWPAAVTGASAVAAF
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