NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186079_1024594

Scaffold Ga0186079_1024594


Overview

Basic Information
Taxon OID3300017301 Open in IMG/M
Scaffold IDGa0186079_1024594 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 259 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0325_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)970
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002472Metatranscriptome556Y

Sequences

Protein IDFamilyRBSSequence
Ga0186079_10245941F002472GGAMLPSEMWHSPRIKCETXXXRDIHGVSQGAGSGGWPTIRYFNKETGYGGAAYKKKTSQAMCDELGPKGDYMQQYIEEAGGTSLCSIANPESGCSEKQKTFIDKWQSKDSSELEKQLNRLKGMLEKDSGSMKPELLSWAKQRLAIFKQLTARQRSEL
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