Scaffold Ga0186323_1023052

Overview

Basic Information

• Taxon OID: 3300017291
• Scaffold ID: Ga0186323_1023052
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in enriched f/2 medium with seawater, 10.6uM sodium metasilicate, 16 C, 35 psu salinity and 92 ?mol photons light - Pseudo-nitzschia fraudulenta WWA7 (MMETSP0851)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 967
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 34.0847
  • Long. (^o): -119.05
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016530	Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186323_10230521	F016530	N/A	MSFPDSVIKAGIPAGSSATVSLPEDGWDMLGLGASDAMNEKELQIKNGQVSLLTGADYFSAKKSFEVEQRDSYRQQWQFEAEQRLARIEAKKSPLEKAGEGSMKTQKFAWSKDGQKSFEWRKIYHALLGGVGGMPEGGIATETLISPTAMRMYTDHRVMGAVVLPGVSHVSLFAATGSVGFPSPGGLANDWHMSVKEVLFERPYIVNSGAELIAAISAGADPSQIGGPGQGNMQAAMLPVGVPMTYCRCTGVSKERGQIKPTSDWTK