Scaffold Ga0186611_103978

Overview

Basic Information

• Taxon OID: 3300017234
• Scaffold ID: Ga0186611_103978
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2-R medium with seawater, 210 ?M silicate, -2 C, 35 psu salinity and 502 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0906)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2163
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -48.1
  • Long. (^o): -24.25
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045520	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186611_1039783	F045520	N/A	MAQFKVDSTEKIRVSIGIAKYNEYVKEIVDKHGKEKATEIISEPTEQLKDIEAYQVLHRLANNVPLKGGAPRTNDEIRNWTYADQVRLEMGEGEWWDSVKIVGYEFGLEKADALFGLSKENDMIESAQIRLVPGFKARKESTLSSVKKIADSVKEAAPSGKTSADFADAFNDLYPTEDDLKAAL