Scaffold Ga0186196_112296

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186196_112296

Scaffold Ga0186196_112296

Overview

Basic Information
Taxon OID	3300017228 Open in IMG/M
Scaffold ID	Ga0186196_112296 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from unknown location in CHM medium, at 25 C, 0 psu salinity and 642 ?mol photons light - Cryptomonas paramecium CCAP 977/2A (MMETSP0038_2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	909
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020015	Metagenome / Metatranscriptome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186196_1122961	F020015	AGCAG	MTAGSKGGHNQSFAKRVFLASTVAVAVLCLGVLVVERDDDLMGSALGISYYAVTKPPAFNFNRFIENVWIYDGRSASRDEEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSQDIHCIIFPPLSHFPGIGELAKKDLRGYVSAGNNIVFVGSYEWLSIMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMSRLEQPDGSIYSVKVDSIPMEGACMFDTMGACVVFFTKYNLGTIVYIAFAYDTPYGIGHWDQILHAAMMM

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