Scaffold Ga0186352_119315

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186352_119315

Scaffold Ga0186352_119315

Overview

Basic Information
Taxon OID	3300017224 Open in IMG/M
Scaffold ID	Ga0186352_119315 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from North Sea grown at 20 C, 30 psu salinity and 440 ?mol photons light - Ammonia sp. (MMETSP1384)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	827
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	North Sea
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070864	Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186352_1193151	F070864	GGA	LNYSLSPLASIAIMSYENALKTVNFLLEVLEEADKPAPIDSGAKATTSTAAPVSDEKEEYFTSVEDDGVKEGSTVKVTTNLKRLDEAWAEAELGSNDEKGMYLGVIGKIMEVEEDDDTVQLRWANLDTCWMPIKACIDAKGAEPTLPSGMISHLDR

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