Scaffold Ga0186523_111263

Overview

Basic Information

• Taxon OID: 3300017166
• Scaffold ID: Ga0186523_111263
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in filtered seawater, 15 C, 29.4 psu salinity and 162 ?mol photons light - Favella taraikaensis Fe Narragansett Bay (MMETSP0436)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 815
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.30051
  • Long. (^o): -71.71543
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045792	Metagenome / Metatranscriptome	152	Y
F081745	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186523_1112631	F045792	GGA	MENAKIYAENVIRNRKEAINLRRFGVKMGALSAKLESAHRTQQIST
Ga0186523_1112632	F081745	AGCAG	MLQKCMKQMDSLGVAGSIGNFEQVFEDLDVKTGDMNAALDNIYSTSIDNGEVMDLLTQMR