Scaffold Ga0186615_107118

Overview

Basic Information

• Taxon OID: 3300017154
• Scaffold ID: Ga0186615_107118
• Source Dataset Name: Metatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 467 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1389)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 951
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: South Pacific Ocean
• Coordinates
  • Lat. (^o): -39.0
  • Long. (^o): -176.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020015	Metagenome / Metatranscriptome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186615_1071181	F020015	N/A	AAAPVAALSHQKPKRSWAVRAAVVSTLALAAVACLVLFSGEKAGEHTNNALGGSYYAVTKPPAFNFNRFIQNAWFYDGRSANPDMEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSENVHCIVFPPLNYFPGVSGLAQKDLRGYVSSGNNVVFVGSYEWLSVMNDVFGFQLMSDYKDGPYFRNDRNVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGKCMFDTMNACVVFYIKYNLGTIVYIAFAYDTPYGIGHWDQILHAGMMM