Scaffold Ga0186524_111450

Overview

Basic Information

• Taxon OID: 3300017107
• Scaffold ID: Ga0186524_111450
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/20 medium, no silicate, 19 C, 30 psu salinity and 446 ?mol photons light - Strombidinopsis sp. SopsisLIS2011 (MMETSP0463)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 939
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.0
  • Long. (^o): -72.0
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011850	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186524_1114501	F011850	N/A	MARTVLVLACSLLLFAPSSHAFAPAGVARVGMPLRGKSVSARSARVTPAKMAMDPSQLSHIADGAQTFLSTLDTVPFIDEVTGEPQGFTSPKNHFASVIGLWVLFALPVWSAAYKQAGCTTPDWFGVSQVAEDAPGVGLLAKAAPEYNGPSFREGLEYVFSFVWKPPILIAWKPRADLDRDAMDPARDTVVSSLYKGLGGALDKTAVYDEEDQLLILSDIVTFEETDLGRRREAIAEASGWYTGNPSFGRSLIEYSEQTRKGKRDQGTVTISTEELAKLRAEAAKK