NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186122_111742

Scaffold Ga0186122_111742


Overview

Basic Information
Taxon OID3300017027 Open in IMG/M
Scaffold IDGa0186122_111742 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in H/2 medium, no silicate, at 23 C, 0 psu salinity and 696 ?mol photons light - Hanusia phi CCMP 325 (MMETSP1048)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032673Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0186122_1117421F032673N/AVMNDYGSVPSVSSSMPRRKTAMMYAGIAVLACMAVIGMAFVSYDQDEGFWDDGSVTLAQLNKQEMNEILAKAKSMSTDQLRAEVAQLEADKRTRTTSLAKVRKQSLVVRGGQEDVAGNPEGGIIENVPPTVVAPVPGPPDFNGASAIIARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQVQTGHIPRGIVGEFDIMTCRDLTNGEVQYFRIRYD
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