Scaffold Ga0186394_104284

Overview

Basic Information

• Taxon OID: 3300016978
• Scaffold ID: Ga0186394_104284
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium, 20 C, 36 psu salinity and 297 ?mol photons light - Pseudo-nitzschia arenysensis B593 (MMETSP0329)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2008
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.8083
  • Long. (^o): 14.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045520	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186394_1042842	F045520	GAG	MAFNRLYKHIESLIQTDDDVGDSIPCKADILSVRECRKGGKACDELGLDLLRCMAQFKVDETEKIRTSIGVAKYNEYVKEMEDKHGKEKAAEMINEPTEQLKDIEAYQVLHRIANDKHPKGPPKTKDDLMKWSYADQVRLEMGEGEWWDALKIIGYEFGLAKTDALFGLKKENDLINSAQTRLIPGFDEKKASAMSAAKKIEESVKEAAPGGKTASDFAAAFNDLYPTKADLDAAL