Scaffold Ga0186202_100389

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186202_100389

Scaffold Ga0186202_100389

Overview

Basic Information
Taxon OID	3300016925 Open in IMG/M
Scaffold ID	Ga0186202_100389 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from unknown location in ASW medium w/o nitrate, at 20 C, 30 psu salinity and 582 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0746)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3828
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082263	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186202_1003892	F082263	GGAGG	MFSLHMFINIIFLLLIDLLLFYFLPRLALSSIPDERRTEAVQEWAGAVSDMVQNEVELDAWCVERSIVSIRVAKQGGEGWLNMSELRDLYRWMSMDVSSLVTEASAEEKESLSKPAYIGQPVDVAESHAIVRVALGVDSLLSYFDNKVGTLEEDKATVQKLAAIAKHFNTLKKSGM

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