Scaffold Ga0186587_107609

Overview

Basic Information

• Taxon OID: 3300016885
• Scaffold ID: Ga0186587_107609
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium, 4 C, 35 psu salinity and 113 ?mol photons light - Micromonas pusilla RCC 2306 (MMETSP1327)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 851
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 70.55
  • Long. (^o): -140.8
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065351	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186587_1076091	F065351	N/A	HQYYMEAIQREQHAAYMRDLRQSREYKDRENKLRVLGRIKEGSVPHVYSLTKYNITRDDINDLRRRNGFDDLIETIPYWAEATRLRRRNMEDPSSYVPEAPPAQPAPDLPDRVGTAGDANTESFSVKAINTHFRTEGREIGTKTNQRAKQGTVSRQFGPPNSGEKSGSFARFMEFLGPRYLEDARELLGRNTLRHIETEMTKKHKKERKPPPGQSEFIQLSTMVKLLETVLIVLREYPPFDALCRVPGKSDDDCEQPAQESVKKRYEEIDALFNKYDAQVNAA