Scaffold Ga0186387_15442

Overview

Basic Information

• Taxon OID: 3300016835
• Scaffold ID: Ga0186387_15442
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 676 ?mol photons light - Bathycoccus prasinos BCC 99000 (MMETSP0933)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 819
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 3.6
  • Long. (^o): 43.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070819	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186387_154421	F070819	AGG	MIRKTADTASTRRSSAALPFLCAILSFSAVCLVVAMSCLASGFVVASGGVGNNNNMQEKVTKNLRTRLDAVHTNDIDCNTCVRVNEFLHAELVEMEEETNVDAIENEEELAKHHAKEMKTRKRKLLHGRSEPKIRDTVLHACVKCADYDRKKTYYLQDHDCDACHVILFGGKERGRVLLEGKDGEVEEDERRLGHAFHALVDHTFELGTPELQEMVDFLCVPHFCRVKEVEQRFSGGFEGARHEEL