Scaffold Ga0182072_1348922

Overview

Basic Information

• Taxon OID: 3300016754
• Scaffold ID: Ga0182072_1348922
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071405BT metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1006
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009668	Metagenome / Metatranscriptome	314	Y
F020852	Metagenome / Metatranscriptome	221	Y
F021995	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182072_13489221	F009668	N/A	IWVEEDAEWKAEFEEYGYDTDMWATYGDGDVWRDNVAVVDVLEDEEFGFICGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEQYESIG
Ga0182072_13489222	F020852	GAGG	MLTLKNKTTTTHADDDKYSCVVTRYDAEGFAQCNGSGIWDYEGDLKVAVSAVEVHNATYEDGDTSTMIYVEHTANGDGDWRIYTDEGFEESISKALGYDVTFTEQGMQDWGVASLET
Ga0182072_13489223	F021995	N/A	MRAIMFAVVDFDRNKSFFFTCFQTASDFITQYPVIQNTVVVDFSEKYPEVELL