NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181505_11183954

Scaffold Ga0181505_11183954


Overview

Basic Information
Taxon OID3300016750 Open in IMG/M
Scaffold IDGa0181505_11183954 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15246
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035051Metagenome / Metatranscriptome173Y
F058932Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0181505_1118395413F058932N/AVRLGDTDSRSPRERDGLSAGLRIACVSGHSRWWRKQRLVAKYFQMRLAGVIYPDVYCLALMLADKFDFLLEGEKVAPGQYDLILAELQASDSQLRYLESLVDAAAPPVAVIPGPPAILSRELTDAKLRRVKRILSAARHVWAYAPELKTFCDGLIGRERATVIPWPYDLAATQRLAQNSSPKPDAHRILVQVPMSFHDIVQNHPFVIKGVLLDLWQELPAALRQRLTFHTFIYNSEDRARYHASGFADALPFVLQRKLGYRAFVRFLAGCDGVVNLTAGSILGRVTFLSAALGRPGIFSDNSQLNARLYPGSQVAMFDTVRLRDLLRAMLSAVDTGIADQRLLPSASAAADIGNFAANQARLREILTSSS
Ga0181505_1118395416F035051GAGLNAKIRLEMTAKNASLNLRIRSDLKAKLESVALSESRSVAQICEAFLQAGLVAYDKEGARYISHFLARRDAPPRDRAKEHS
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