Scaffold Ga0180048_1146437

Overview

Basic Information

• Taxon OID: 3300016690
• Scaffold ID: Ga0180048_1146437
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES019 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 667
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024466	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180048_11464371	F024466	AGGAGG	MVVYTMIMMTTDDTKARYDDRAMYVLSDMSHVLDRITDRKVGGIDALSM
Ga0180048_11464372	F024466	N/A	MVIYSMMMMTIDDTGARYDDRAMYVLSAVSHVLDRIMDREIGSIDALSMGTMMMPCIS
Ga0180048_11464373	F024466	N/A	MVIYTMMMITIDNTGARYDDRAMYVLSAVSHVLDRIMDREIGSIDALSIKTMMMPCIS