NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182039_11485359

Scaffold Ga0182039_11485359


Overview

Basic Information
Taxon OID3300016422 Open in IMG/M
Scaffold IDGa0182039_11485359 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000906Metagenome / Metatranscriptome842Y
F097074Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0182039_114853591F097074GGAGMATLIALGAIGLFITGAATGIIGVVCLAIRREDKNLTLTSQATDNVSRAGRWLTGVHVRASIPSVATGRPTTPP
Ga0182039_114853592F000906N/APALLIGVLGSTHSQARDIPGYHAPPQDSGLVACSYPLTTQSVSAADYQKIRAEFAGSRWPDLRTAGTAYVDLATALLTAHGTDGYQTVWFYQRLSAACARHRR

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