Scaffold Ga0182034_10559810

Overview

Basic Information

• Taxon OID: 3300016371
• Scaffold ID: Ga0182034_10559810
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 960
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000156	Metagenome / Metatranscriptome	1877	Y
F001243	Metagenome / Metatranscriptome	739	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182034_105598101	F001243	N/A	HLSRKHRLPAAPAIALLQEAMPRPGLPLVHFNDTRCGSAEELRSVILMARRLAYHDVERERAAVALRNWLLAQIGRKRPASAANIGETVPAARFPAERLAA
Ga0182034_105598102	F000156	AGGAGG	MARRNPPRKVTYFEPLPPRLPRNTIIESTFDVGRRFRCTMRVDCGQLDPGGVIHPIRGEWHPHMPERLDEEELADWRAGRNAVYQLAALTIGARLAVTDG