Scaffold Ga0182032_10219710

Overview

Basic Information

• Taxon OID: 3300016357
• Scaffold ID: Ga0182032_10219710
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1458
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052218	Metagenome / Metatranscriptome	143	Y
F058483	Metagenome	135	Y
F094017	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182032_102197101	F052218	GAG	MSTPNSELDKHLQALFGGLDTRADFDARLMARLRAESQTTATERAVRTRERERARYRRAVSELQIWRRSMLRMLTLDALGIALLLVAAVVTAWPH
Ga0182032_102197103	F094017	N/A	MPPRSRYLLRGLIWLGIGLAITFGGRDWLRGPIGGAGWIAVAIGAAYLIFYLVEGRGTTVPRQEPPAANGDQTP
Ga0182032_102197105	F058483	N/A	LCQTTAMNDLLSAAVIGAIAGYFIARHSPEIEWILRTLIG