NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182041_10175154

Scaffold Ga0182041_10175154


Overview

Basic Information
Taxon OID3300016294 Open in IMG/M
Scaffold IDGa0182041_10175154 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1683
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049351Metagenome146N
F087960Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0182041_101751542F049351N/AMMNTTVSPASKKVDWIPMPDPIREEEVNIQLTWVADARTELAIKRQATLMGFDTPADYLTQTIAKALTTNDAEIVISQDGRLVHESHVHDMDGTPRDS
Ga0182041_101751544F087960AGGAMKYFALLLIALSLAVTTACRGADRTITWHPWQQWAEFRVRTGDRYLGGERWEHYLGFELHQPSSKKIKISMIYLAEEPVPDVVIAPGRRYAIVKVTNSNMTAHRGRWSWIAQEMGPRNRSSHLGLID
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