Scaffold Ga0132257_100235863

Overview

Basic Information

• Taxon OID: 3300015373
• Scaffold ID: Ga0132257_100235863
• Source Dataset Name: Combined assembly of cpr5 rhizosphere
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2180
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017384	Metagenome / Metatranscriptome	241	Y
F054170	Metagenome	140	Y
F102897	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132257_1002358633	F102897	AGG	MDLGVWREITDVYGGKVTRASYRLFDRTVTVRTSFGSKAAQIGGHTPDRLARSLLRKLVNERT*
Ga0132257_1002358634	F017384	GGAGG	MGLEVWRAITADYNGRTVKGSFKFIDGVVNVRTPRGSRTMQSSGHTPEQMARQLLRELAREQKI*
Ga0132257_1002358638	F054170	GAG	LRGWCGKLKGNTVMNVTIDREEADEVLSRDVSDEALEIAGSAEIAGGYTLQFCTS