Scaffold Ga0132257_100037280

Overview

Basic Information

• Taxon OID: 3300015373
• Scaffold ID: Ga0132257_100037280
• Source Dataset Name: Combined assembly of cpr5 rhizosphere
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5331
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001239	Metagenome / Metatranscriptome	740	Y
F004912	Metagenome / Metatranscriptome	419	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0132257_1000372802	F004912	N/A	MTPSSIAFGQDPTPGKYSCSIANIVGLQTDSQTGSRNAATIVPAERQQTFFVTIEDNKQQPEDWCFGAEALDNLKKLRRGEKPDAKSKTYFLDSSMFFTGCQARFRLSTNGGPVDGLYHSENLAIFRDEFSQFWLRNGLNYIWQFVDLKGNAYLAEGRCEKVN*
Ga0132257_1000372803	F001239	GGA	MLSPNCPKSLPPLAVTEGDFLISASFAFRLVSLPLALVVFGCGGQLSMDEAGLLDAVAFVTGGQQEGAVPQGFETRWRRTVHEREIKYQSIGPYAGFDQANDPHRDSHRVRIGVTITSPTKCMFKTIVTTEYSRGASGESFGDATNEVATLDFNKVRRFDIEDGNSPNVVIEGTGWMCKQGGCQDIVKIGISAPRQEEARAIESKRHAMDFIKRACPPRPDSPTH*