Basic Information | |
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Taxon OID | 3300015372 Open in IMG/M |
Scaffold ID | Ga0132256_100374774 Open in IMG/M |
Source Dataset Name | Soil combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1521 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Bethesda, Maryland | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F086134 | Metagenome | 111 | Y |
F093687 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0132256_1003747741 | F086134 | GGA | MVLELLFARIMNSTDKKTTALALSEQPQETEAILLERLKNSSNSDDYFRWMLFVVGFYRGINNIDAATDLLEGFIKAGKDAEQTAHCYLALGQIATDEQRLEDALKCFTLALEFAPKRKKVAYVLHNNIGFCLNSLARYSEGE |
Ga0132256_1003747742 | F093687 | AGTAG | MSHAKSLRVVGQCLEYAHIATFELEKYGPQYMLWSETVNEAGEKALRSLLNDRLEFSNEIRHLSPKRVFVFSPADISRLDAQAQRQRKNRSTQAMPPYKIVSHGLRILGDHLDRIQANAFRIEWLSGSVIMDHQRLDGARNFKRF |
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