Scaffold Ga0132258_10618706

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10618706
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2720
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081468	Metagenome	114	Y
F094353	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_106187062	F081468	GAGG	MDRLDDADIGIIWERHYPKRAESGSSMSLCITLTMIIKQRTKLVNQYEAWSLN*
Ga0132258_106187065	F094353	N/A	MCDRCKQLVDGIRREQFTAGFYDMAKWEEYRRDNERYVCESCMFADPKYVERYGSCF*