Scaffold Ga0132258_10212882

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10212882
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4696
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000432	Metagenome / Metatranscriptome	1148	Y
F004783	Metagenome / Metatranscriptome	423	Y
F064758	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_102128824	F064758	AGGCGG	VEEGREEDVTSVVELLLLVVMFVIGSRVHGVRSSPWKLLAFVVACLVVLALLFLILAK*
Ga0132258_102128825	F004783	GGCGG	MQTIQDQLTLLLRAYRTVRFCDGCLALKMDAFPRDVREAVVLIGNGFQISSGKCSECLQEKTVVRALAA*
Ga0132258_102128826	F000432	GGAG	MPDEATLRAKAREVIHAETLPNRRPDRTWGGPGIGVLCTICSEPVTRNQLEFEIQFTIDGGAEPGLERFHIHVRCFAAWELERSADGAHT*