Scaffold Ga0132258_10044582

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10044582
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10107
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020373	Metagenome / Metatranscriptome	224	Y
F026990	Metagenome / Metatranscriptome	196	Y
F035666	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_1004458211	F026990	N/A	MDLDTAMKNPGSVFGTPEALSESSELAPGEKRAVLLQWKDQLEQLQAADEEGMQKSGPAAGSTAELLARVTNVLSRIEADL*
Ga0132258_100445824	F035666	N/A	LRHVDVKVPQQMVPGDLYLGWVCKNKSCGRVIAIALPPAGSKPAAADSDDQLAAIKCPHCGDEDLYRWNARSEHQYAAGAAAT*
Ga0132258_100445825	F020373	GGAG	MNVLIGACAVLAITSCVAGCATSASASDSVRVATTLDEVASCKLLGKVVVSETDPEKEARHQTVALGGNVLLRKTDQVWNGNAYQCPAAVR*