Scaffold Ga0132258_10042648

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10042648
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10316
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014172	Metagenome / Metatranscriptome	265	Y
F016335	Metagenome / Metatranscriptome	248	Y
F054302	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_100426482	F054302	GGTGG	MAGLFAKLKDVVVSPDALRHALGQAWDSLIVWVVAAVVTAVAAAVVGGLLLYSNVGHKLPSTPPSPPRTASTTLDFPGYFTILDQLTGRFNEREEFLRSLKAKKLRWRGYVSYVRNSDRSPLQIVLAITPTPSDTLRMALVYFGDDMRVRLYALREKDSVEITGTFDSENWHTPYILGDTMQLLAAAPAELGNQTSAPPEKGSQGQ*
Ga0132258_100426483	F016335	AGGAG	MRKIKIEVVERAGWWQVKVCGLRHSRYRSRAAARHGANLLAARVQKLRVQARSRAGRMQLGQCLRVAHCELYCIRTLLRGRR*
Ga0132258_100426487	F014172	GAGG	VNQRTHPGKFPPLGRRAPPQDATASGIEVHEEKWGTVTVQHVYKMRCECGRSWFELELPRFVKCPGCHKLDYVST*