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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300015360 Open in IMG/M |
| Scaffold ID | Ga0163144_10262320 Open in IMG/M |
| Source Dataset Name | Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2267 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Lake Vanda, McMurdo Dry Valleys | |||||||
| Coordinates | Lat. (o) | -77.5281 | Long. (o) | 161.59 | Alt. (m) | Depth (m) | 19 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031322 | Metagenome / Metatranscriptome | 182 | Y |
| F074319 | Metagenome / Metatranscriptome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0163144_102623202 | F031322 | N/A | MASRDQLVSPNYITTGKKDDLSALRTFGCRVWVRPPGRRSAKLIPNSRKGIFLGFIPNTDKNIIWYDTETHVVKIAMHVLFDEGMNDLPPDLVPPNVVHLQRMQNGEPLPAETEETSVDQFTFHLNHFSYTMVKGVQVTDDDPSYGLTLASDELNYRAYVTDVKENSTADKMYAPHKSTLKNVKGAYLVGINGKRVFGKDGAISMLGGLYDKRAENIQLELAIKRKLSSAET* |
| Ga0163144_102623203 | F074319 | GAG | MEPSAIPDADHQHQLSLADICCISAICYPHLDFSESSLSTKEMEMVIQAIQSQATIPAEQAIGRFTRRKLCSLSSWEQWRAGKHKQLDHFHDLKMYGEPVRKPPGAIVLRPHWQYSIKRDGTRRSRNCCDGSPRSAPLLHGIASTYSSCVEQPEQPVQRLFFALAARENYRVYGGDAQDAYAHSPPPETLTFVSIDDAYADWYKHRFKKKLDHSLVLPVLHALQGHPESGKLWEKHITAIL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |