Basic Information | |
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Taxon OID | 3300015360 Open in IMG/M |
Scaffold ID | Ga0163144_10000094 Open in IMG/M |
Source Dataset Name | Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 202609 |
Total Scaffold Genes | 217 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 147 (67.74%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Lake Vanda, McMurdo Dry Valleys | |||||||
Coordinates | Lat. (o) | -77.5281 | Long. (o) | 161.59 | Alt. (m) | Depth (m) | 19 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F038776 | Metagenome / Metatranscriptome | 165 | Y |
F040370 | Metagenome | 162 | Y |
F065185 | Metagenome | 128 | Y |
F069394 | Metagenome | 124 | Y |
F071164 | Metagenome | 122 | Y |
F085609 | Metagenome | 111 | Y |
F103138 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0163144_10000094103 | F085609 | GAGG | MQNKVVAEAVRVEYEEKTGKMYIVFEVKDEKYKQDLKKNWTKDIEFRLVDKLLVEGE* |
Ga0163144_10000094112 | F103138 | N/A | MKGTILLNHNENTKKVEDEEKTRYLRGLLEQMGVPVQEFWTSDGPLSVDQKIKLRGILATYNIQVIDDLDGHMQVYVEGEKVAEWFKCTYKLKRDLREIDPRKQLYLEMEVNCWSLFEESEQEQ* |
Ga0163144_10000094117 | F065185 | AGG | VKIEFEDKSYIEVTKSDNPGKVIVVISAKDHENPLKRIVNAVEVTVEQFKKLVSEVS* |
Ga0163144_1000009420 | F069394 | AGGAGG | MIKKAYAVQMTYDVSDDEKQQAQRALLFFGHTNKLLEMASDHLDIMKTPFKDNPEMDPKEVVKARAAIRRFRDKSVENFNVFKKEAFKCVNVMQPFSTDTQTLKLMKSFITSIDGLETKVNQFSELFNDLESKSFSQDIVKNIEGIQEECKDLSEIIDERIKSHIQSNILATSWVDNVSNDLQMQIEEKTPLIMDLFNKRQDNLNEAIKERTSQEGN* |
Ga0163144_100000943 | F038776 | GGAG | MSKFQLDYSGLENKVYKKAYRLNDVKDQLETVAFDIVRFKDNDKGADLWQVQSSDDGDYIVSLYQPDEDVKVAALWEVLVSKTAGDLQISYKGDPLVRVSASQMGIPRTELSQVESYLPAKLASNKKLVKALLNELPESAKKEVLSKYPELV* |
Ga0163144_100000946 | F071164 | GAGG | MRISEMLTAIASWLESPNNEAMLLAEYHEDSAKVVAESCVLAAALLKNAALEVSDMEPPEPSKITPEAIEEIAALAAAFDASGDPQLKKQASVLDELLMSVAAPPNAYAARKDLEDKRIEDLKKKYEDPSKELRDVNKIADSEKAIEKSEMTKNYKIMEAPLSSRYCPDHPGVQIARVGEHLWQCELDKKSYNYETGFELNNGAKVPGGDVSQQTQGVDVPSHAIFDTREGRLGSNRS* |
Ga0163144_1000009471 | F040370 | AGG | MSTNNFFKSNLMGLHNFVQASMLVFPKEIIISTLRDFFSKDDYYHFSKDQWGFANTTDHTDLPPGADIPTQHNANGANQEGLSTRIYIGENYRKDGIFYPAVLVKSGGSKSVPISINREQESIQYEDIIYEDGYGNETIVHRPHSFITAGVWEGTIIIDVMSRSLRARDDIAEAIAMCFTEVTFETIEDIGIIIKPISIGAASEGDDRNDKLFRQTLTLDIRTEWRREIPVGNVIDAIFFTVTFEELSSPGTPVPANLTANTDVSLSDMLLNM* |
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