Scaffold Ga0134089_10109902

Overview

Basic Information

• Taxon OID: 3300015358
• Scaffold ID: Ga0134089_10109902
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1063
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019913	Metagenome / Metatranscriptome	227	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134089_101099022	F019913	AGGAGG	MAMPSGDSPQKAREFYEYLLAHHETEHRVKTWYVDWLSLAWLWGFVAALAVILVFWVWQYRTTRQKTGIYAADTWSGLTSELAGPSTFFFLLLTAILTGFAVAVIVGHIVNGQIF*
Ga0134089_101099023	F090360	N/A	MSVAVAPPFVSFSSMTEAVVPASEWQYLYASLQALKAHVQEYPGCQRMEVWVAVDDDGSMRIHCYTTWDTPEQLEVYLERGYTFERLLADVGLTGVERSMTMEKLF*