Scaffold Ga0134072_10083624

Overview

Basic Information

• Taxon OID: 3300015357
• Scaffold ID: Ga0134072_10083624
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 953
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001079	Metagenome / Metatranscriptome	785	Y
F007262	Metagenome / Metatranscriptome	354	Y
F021376	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134072_100836241	F007262	N/A	WLDLAWLWGFLVALALIILWWLGQYRSTRQRGIYPTDQFGGYTSEAAGPATRFFLLFTVLITGWAVVLIVGHLVWGQKF*
Ga0134072_100836242	F001079	AGAAG	MAAPEAAVPSVLPYVTWSSLTIAAVPAAAWPQVFGSMQALKGHVQEYPGCQKLEAFVHAEAEGAVRIHCYTTWDTPDQLEAFLERGYTFERMLVDVAGITAQPTLVMEKIF*
Ga0134072_100836244	F021376	AGG	VYVKHLTSLQFLTYVGFFAVVIAAMFKFVPGKAPPVRTEPYPEDELGAHDRKTAKYFVAG