Scaffold Ga0137403_10006587

Overview

Basic Information

• Taxon OID: 3300015264
• Scaffold ID: Ga0137403_10006587
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13260
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026700	Metagenome / Metatranscriptome	197	Y
F045235	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137403_100065873	F045235	N/A	MERLNAAGVPCKNMAIGSDEIASPADPLPIDWKPRFGFEVAVPSHDVTAAQQILEKLLGEEPEDLEIPEQPLAEAKELPLTDATETNPTIEVWTGADDKIAEFLTSALQENEIPMHLENPAGQTHIYVSAANEIRAREIVREVTEAAPPN*
Ga0137403_100065878	F026700	GAG	MTAETKYCPLCDAEYGSSHSQCSVCGVDLVPEELRGRPLDERQRKERIVVVWRGGDPLAVSEVISALRDAGIRHHVQPTNEHLVFELGMPRPKYAVRVFSSDAARAKALIADIRESLPFALDEADEHEQELEQAAASATAPEHECSPAAATVEIWTGEDGALAELLEACLRENRIGVRREGAEPGALRLLTMPAAEAAAREIIREVREATPPA*