NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182007_10350868

Scaffold Ga0182007_10350868


Overview

Basic Information
Taxon OID3300015262 Open in IMG/M
Scaffold IDGa0182007_10350868 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)554
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1591Long. (o)-96.4086Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082513Metagenome113Y
F084421Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0182007_103508681F084421GAGGMRLQTTTTAFPEKRASEKGAALITAVLLSLLLLAAGGTLILTTAM
Ga0182007_103508682F082513N/AASVSDASRSNVQDSGEDITYFINLADNTKYLARHDEYGNGSTVLANRIDSMNIHYFDQKVSYTAPMAGSDITNVSAAEVTPGNAKYIVIAISVTLDQVGTPGSTGYQPPFSVLLCSDVSLRNSGLWSY*

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