Scaffold Ga0182007_10121998

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182007_10121998

Scaffold Ga0182007_10121998

Overview

Basic Information
Taxon OID	3300015262 Open in IMG/M
Scaffold ID	Ga0182007_10121998 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	872
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location Name	USA: Nebraska
Coordinates	Lat. (^o)	41.1591	Long. (^o)	-96.4086	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032982	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182007_101219982	F032982	AGGAG	VDDALKSLIQQYLHVRKKQRHECIHELGLSEEEADRAVSTLELYYHIEASHDQWAQAWMAAKRDFLAGADRSGIKLADLVLKYVDIARLGGGPESRWT*

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