Scaffold Ga0180085_1006895

Overview

Basic Information

• Taxon OID: 3300015259
• Scaffold ID: Ga0180085_1006895
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3115
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9517
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012367	Metagenome / Metatranscriptome	281	N
F057177	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180085_10068954	F012367	GGAGG	VITRRELERWLLREGAVRVKRADGHKHFTLRGHHVVVLGHGPQTLSATSLSLVMKQLEQAGYSREQLRREWGGERG*
Ga0180085_10068955	F057177	GGAGG	MVAGRWGPALVIGLIALAAADEEYVIWRSSTLNALEWTPGSGAYASKAACDKAAARRRGRVAKAVDFLRRIGADDVVLRAVGDRVYECRPAPTRPPSRPSRSEPGQSP*