Scaffold Ga0167644_1008052

Overview

Basic Information

• Taxon OID: 3300015206
• Scaffold ID: Ga0167644_1008052
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5500
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.057002
  • Long. (^o): -50.459694
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047459	Metagenome	149	Y
F078152	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167644_10080521	F047459	N/A	MRISLNSIWLTNDGASDLQSWTDGHDVLLNGRQMVQDAQFLRALAAQPLARGNAVNMLQFTVTRQHVSVAEAAAYVLTAFSSLPGSGAATIICGASGEVPLTCTFSAVLAEMPKSTFRGTRSDTTFVLRGGLITMGAPLAANGVDGDSFETVYGYPQGGTVDGGNLADGLFTSALNLDGGLFV*
Ga0167644_10080525	F078152	AGGA	MKLTYLSETFFPFRVPEMDSSFASSVGPQTVYPAGFSLDEALQIYWRAQNYQLVASGNGVLGVLTQALGENTLLPPRNAGVGTNTFFEIDGFVPVGPGDLVTGYGMRVVVPGTGTITASGSGVSGTNPSALFNLQVNLFYPEFFAPDPVIRFDGKWWPAMSISCAVTNTVTLDSGGSLSIGYDCTTFDPASTTEIGSFSFFGVSVPVYCTALAPADGSEPAETRMFSGSLTVANEWA*