Scaffold Ga0167638_1028311

Overview

Basic Information

• Taxon OID: 3300015197
• Scaffold ID: Ga0167638_1028311
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1289
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.155586
  • Long. (^o): -50.08499
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017686	Metagenome / Metatranscriptome	239	Y
F055303	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167638_10283112	F017686	GAGG	LSQTRSTAATKPAPIPDETARLFQVALHDVVRSSALSMSELRECVKACVGTLRDTNVGPAQMIISMKACAKEGTRRYPQPLNEHELSNADFLMDQIIKWSIVEYYRDA*
Ga0167638_10283113	F055303	GGA	MSSHQDLTPSPLPEELDRALRGATDRTLVALTVLRKAVRQHVQDERERGTSLPDIEVELRTIIARVLKDAAGRDSIDGERDALAHQMMKWSAGFYRQND*