Scaffold Ga0167627

Basic Information
Taxon OID	3300015196 Open in IMG/M
Scaffold ID	Ga0167627_1000747 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2C, Ice surface)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2C, Ice surface)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Bristol

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18401
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (74.07%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18401

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (74.07%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.163069	Long. (^o)	-50.018284	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Russell Glacier, Kangerlussuaq, Greenland

Coordinates

Lat. (^o)

67.163069

Long. (^o)

-50.018284

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059437	Metagenome / Metatranscriptome	134	Y
F065202	Metagenome / Metatranscriptome	128	Y
F082044	Metagenome / Metatranscriptome	113	Y
F102028	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167627_100074713	F059437	GGAG	VPIGNRYLQGQPVLPYANVKAYPSTDMFLDLQFIDHTNTPVVPTSVSIEIDDITNSVILFGPTVLTAAGVVGPPITYGAFASSMTLQVGPSVWTMTYPYVGSQLCQVGMQFTAIDSVTGQPFTSTSIIAVIELCALASVSGLAY*
Ga0167627_100074716	F102028	GGA	VSDDVTQNPKHSWGKWPKINPETVAPLRDDKPDLYNHQPTRFVSKDEAKGRGWKHFWTGEVCVTGHRAARYVSNVSTCVDCVRIEKGLLPVYGKGVPELEAARKRNYTQKNTPTVTGPLQPSSAEKLFLTKYAELKDFVLAAEACGRSEAEFLAILSWNATFRDAVNRLEESIGITHTQQITEFFDWTEDKRRSFLITYANTADMTKSLRSVGATNVQFHKELSDNGDFQRGFEDANQIARAVFDHAAAASATKGDARMLGRIAANFFPEKYGENLKMDLKVTQNLSMDQAHAQLTNLISRFDRQGLLSAAGEDEELVEEAEYKVLEPARNNAVDPDPEPESADSRPDPNSDLVSGS*
Ga0167627_100074720	F082044	GAG	MSVTFKLVHEEGIRLRQQAAHKTEQIDEKTKILSTHVDWRFVKRPASDGKITEDCQQDEDSRRVDSSGRKAQLGTYTVHVTSGMNNLVVERKGKVTPFNFKNPSIRNQVRVQYQTLVESGRKTKEGKPVHEWKNDGAAKYIPPNTFDGVFIGDNQRAIVDEIPT*
Ga0167627_10007479	F065202	N/A	MKAVSHGFKPTSGGPSVAVAKEFMHADMRKSAHKSKEGRSDHKRDMNDWAEGKRNTP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0167627_1000747

Overview

Ecosystem & Geography

Associated Families

Sequences