Scaffold Ga0167666_1005723

Overview

Basic Information

• Taxon OID: 3300015194
• Scaffold ID: Ga0167666_1005723
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1c, glacier snout)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4044
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium calvum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Rabots glacier, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.907119
  • Long. (^o): 18.447522
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010995	Metagenome	296	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167666_10057234	F010995	GGA	MGEWTRLALNVAGITCYRKGVDMAKQAQRPVVILFEHALLGEGIAKYLRAQTGVQATVAPSHHPEAVRLALALGPAVVIFESSYPFQQYDLTTLAPHAVLIDVSTVITRGSVVVPCAAGLAQILQAVRDSSAAAVPAKGRPVETCTVVSRTRTHAAPTR*