Scaffold Ga0167668_1010580

Overview

Basic Information

• Taxon OID: 3300015193
• Scaffold ID: Ga0167668_1010580
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2083
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Rabots glacier, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.872223
  • Long. (^o): 16.713705
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009643	Metagenome / Metatranscriptome	315	Y
F104566	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167668_10105801	F104566	N/A	PMTADEVLAAFEARMEQRLDLGVVNRALNVFLEPKNPFEPERRRKPKMETVIFGMLLALVVAAFLFFNLAAPRLQVYP*
Ga0167668_10105802	F009643	AGG	MSSAWKARLDGALREGDVAGLYFTTALLIMVEFCFVYWLNRIQIPDVPNVGSGFIVLPPWYRKPRFEVTLLLTVLAGLLFSVCWGLWDLWQKRTDAGSWENAIQSVKQRVKTTTSVAALTGLELALVAWLQS*