NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167646_1002373

Scaffold Ga0167646_1002373


Overview

Basic Information
Taxon OID3300015192 Open in IMG/M
Scaffold IDGa0167646_1002373 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2a, rock/snow interface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6463
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.899243Long. (o)18.344347Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021889Metagenome217Y
F100928Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0167646_10023731F021889N/AACRSLPPREKPPTARQASPEEEVTLIRADSELFAAVVRVQLAGGDDDYPNHLERLRYDSRPYGTPSGYPEIFAGVQGIDPTLSFARARESAMDKLIDNRKQILQMSGVPVGGPVSYPQCAGVRVPLPPPLRGSTSAARSKRADVHAGCPRTPEYYLTVGLPIHGQPEGLKNARDTRGRRVALRGDVWTILVDAHSTGPRGWSWSQYAWVFKRSRWSGRLDLAATILIGVVE*
Ga0167646_10023733F100928GGAMRNAVPLLVALALLACTDRAPTENNYERRTAPPTLSVSATTRVLPVAGGAPDLEISASLRNSTVSHIQVAVGAQCPLFVRIFPDPTGEYSGSLDPSMACVQGGPTLDLAPGDTAVLTRVLRADTLASFAQGTYGINVAVTTTTDLIGAWAGAVQLPL*

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