Scaffold Ga0167667_1004430

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167667_1004430

Scaffold Ga0167667_1004430

Overview

Basic Information
Taxon OID	3300015189 Open in IMG/M
Scaffold ID	Ga0167667_1004430 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb2a, glacial moraine)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4533
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Rabots glacier, Tarfala, Sweden
Coordinates	Lat. (^o)	67.906846	Long. (^o)	18.44555	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087351	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167667_10044303	F087351	GAGG	MKLRAVIIAVALAAVAFPTVAGAGKVYLEDSMPKVSSTQVTVTVRKPAAFKVLMRTSTQGRTRLFLIGKHAPTGGALIDTKTYACDGAAGSFYCKGSYEALPAGTYTFRVVFAGTTPQPAHLELTVRW*

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