Scaffold Ga0167667_1002545

Overview

Basic Information

• Taxon OID: 3300015189
• Scaffold ID: Ga0167667_1002545
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb2a, glacial moraine)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6111
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Rabots glacier, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.906846
  • Long. (^o): 18.44555
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016064	Metagenome / Metatranscriptome	250	Y
F016418	Metagenome / Metatranscriptome	247	Y
F029574	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167667_10025454	F016064	N/A	MADLESPRETVEYRGYSLQVTYASPQWQVLIGMVLKDRPALPPEKQIVKGWNEEETLKRAKTRIDLLIESPSLH*
Ga0167667_10025455	F016418	GAGG	MSYRGYDLEQKTLMVGWQITITKDGKFVRNGSVTKSLTSALDEAEKFVDRVVAEADIAASGVSAPA*
Ga0167667_10025456	F029574	N/A	MLKGIEKMERSARYIVRLQKNGEYTVVMSRPEWANREIPGFATEAEANAWIAGRRQQSRI