Scaffold Ga0167652_1020980

Overview

Basic Information

• Taxon OID: 3300015164
• Scaffold ID: Ga0167652_1020980
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1331
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.900879
  • Long. (^o): 18.43474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F019913	Metagenome / Metatranscriptome	227	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167652_10209802	F000280	GGAG	MARRRMPARPLSGYRDVGRDVRHSRHSEVRSWIILALLIAVYLGWTLIIYFLEPGLR*
Ga0167652_10209803	F090360	GGA	MAAAPPFVSYSSMSEVVLSAADWPYLYSSLQAYKAHVQEYPGCQRMDAFAALEDDGSMRIHCYTVWDTPEQLEVFLERGYTFERLLVDVGIPGVERSLVMEKLF*
Ga0167652_10209804	F019913	AGGAGG	MAMPTGDSPQKAQAFYHYLLAHHETEHRVTTWSVDWLSLAWLWGFVVALSLILLWWVWQYRTTRHKMGVYPVDSWSGFTTELAGPASFFFVLLTAIVTGFAVALIIGHIVHGQTF*