Scaffold Ga0167665_1000191

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167665_1000191

Scaffold Ga0167665_1000191

Overview

Basic Information
Taxon OID	3300015163 Open in IMG/M
Scaffold ID	Ga0167665_1000191 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1b, glacier snout)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22355
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (44.44%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Rabots glacier, Tarfala, Sweden
Coordinates	Lat. (^o)	67.907119	Long. (^o)	18.447522	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032127	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167665_10001916	F032127	GAGG	VSERSQHAFPGTFPGVTMTLDEALLTLNDRLGQEVTAWIEVAHETPLLIASGLLENWSQETTGLTVEAAPTHFDLRGHYSIADARFDLSDAPVESVSDRSNGLTFRLEGGTRLVVTWTALVEGDVV*

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